Synthetic Spatial Omics · Biohub, New York

Spatial multi-omics to
decode and engineer
cell state dynamics

Spatial multi-omics reveals how molecules are organized within and between cells, decoding the spatial logic that governs cell state in both endogenous and engineered systems. By integrating synthetic biology and AI/ML, we transform that logic into the rational design and programming of immune cells.

Research

Research Areas

01 / Decode

Decoding molecular architecture during cell state transitions

Cell states emerge from the spatial organization and interactions of proteins, nucleic acids, and other biomolecules. To understand how cells interpret complex external signals through these spatial arrangements, we develop scalable multi-omics platforms that measure subcellular reorganization across combinatorial perturbations. By profiling how molecular neighborhoods change in response to defined inputs over time, we identify organizational principles that govern gene regulation and cellular decision making.

02 / Engineer

Engineering programmable cell functions with spatial precision

Cell engineering would benefit from understanding where disease signals emerge in tissues, when cells change state, and how therapeutic payloads reshape cellular environments. We engineer cells with synthetic biology toolkits, then use spatial profiling to decode how these engineered systems interact with their molecular neighborhoods. This approach accelerates therapeutic cell engineering while revealing fundamental principles of spatial organization.

03 / Technology

Developing next-generation spatiotemporal genomics technologies

Understanding how past signals and molecular events influence future cell states requires measuring gene regulation across both space and time. We develop molecular recording technologies that write cellular history into the cells, which can be read out alongside spatial multi-omics measurements. These approaches reveal how earlier molecular events bias cell fate decisions, ranging from development to disease progression, and identify causal molecular determinants of cell state transitions.

Imaging-based multi-omics of mature and nascent RNAs and chromosome structures in mouse embryonic stem cells
Imaging-based multi-omics of mature and nascent RNAs (left and middle) and chromosome structures (right) in mouse embryonic stem cells.

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